Search results for "generalized linear mixed model"
showing 10 items of 31 documents
Food for flight: pre-migratory dynamics of the Lesser Kestrel Falco naumanni.
2014
Capsule The post-reproductive stage of Lesser Kestrel is crucial for migratory fuelling and survival. Aims To describe the summer pre-migratory ecology of the Lesser Kestrel in Sicily and review existing data in Southern Europe. Methods We identified the main summer roosts and then made roost counts every ten days from 2010 to 2012. We used case-sensitive modelling procedures to detect biases in counts (generalized linear mixed models), assess the annual population trends from 2005 to 2012 (TRends and Indices for Monitoring); and to model habitat preferences (generalized linear model). We sampled pellets to describe the birds’ diet during the peak month prior to migration. Results We discov…
On Rao Score and Pearson X2 Statistics in Generalized Linear Models
2005
The identity of the Rao score and PearsonX 2 statistics is well known in the areas where the latter was first introduced: goodness-of-fit in contingency tables and binary responses. We show in this paper that the same identity holds when the two statistics are used for testing goodness-of-fit of Generalized Linear Models. We also highlight the connections that exist between the two statistics when they are used for the comparison of nested models. Finally, we discuss some merits of these unifying results.
Bayesian joint models for longitudinal and survival data
2020
This paper takes a quick look at Bayesian joint models (BJM) for longitudinal and survival data. A general formulation for BJM is examined in terms of the sampling distribution of the longitudinal and survival processes, the conditional distribution of the random effects and the prior distribution. Next a basic BJM defined in terms of a mixed linear model and a Cox survival regression models is discussed and some extensions and other Bayesian topics are briefly outlined.
The Performance of the Gradient-Like Influence Measure in Generalized Linear Mixed Models
2015
A gradient-like statistic, recently introduced as an influence measure, has been proven to work well in large sample, thanks to its asymptotic properties. In this work, through small-scale simulation schemes, the performance of such a diagnostic measure is further investigated in terms of concordance with the main influence measures used for outlier identification. The simulation studies are performed by using generalized linear mixed models (GLMMs).
Removing Batch Effects from Longitudinal Gene Expression - Quantile Normalization Plus ComBat as Best Approach for Microarray Transcriptome Data
2016
International audience; Technical variation plays an important role in microarray-based gene expression studies, and batch effects explain a large proportion of this noise. It is therefore mandatory to eliminate technical variation while maintaining biological variability. Several strategies have been proposed for the removal of batch effects, although they have not been evaluated in large-scale longitudinal gene expression data. In this study, we aimed at identifying a suitable method for batch effect removal in a large study of microarray-based longitudinal gene expression. Monocytic gene expression was measured in 1092 participants of the Gutenberg Health Study at baseline and 5-year fol…
A Critical Review of Statistical Methods for Twin Studies Relating Exposure to Early Life Health Conditions
2021
International audience; When investigating disease etiology, twin data provide a unique opportunity to control for confounding and disentangling the role of the human genome and exposome. However, using appropriate statistical methods is fundamental for exploiting such potential. We aimed to critically review the statistical approaches used in twin studies relating exposure to early life health conditions. We searched PubMed, Scopus, Web of Science, and Embase (2011–2021). We identified 32 studies and nine classes of methods. Five were conditional approaches (within-pair analyses): additive-common-erratic (ACE) models (11 studies), generalized linear mixed models (GLMMs, five studies), gene…
Item Response Trees: a recommended method for analyzing categorical data in behavioral studies
2015
Behavioral data are notable for presenting challenges to their statistical analysis, often due to the difficulties in measuring behavior on a quantitative scale. Instead, a range of qualitative alternative responses is recorded. These can often be understood as the outcome of a sequence of binary decisions. For example, faced by a predator, an individual may decide to flee or stay. If it stays, it may decide to freeze or display a threat and if it displays a threat, it may choose from several alternative forms of display. Here we argue that instead of being analyzed using traditional nonparametric statistics or a series of separate analyses split by response categories, this kind of data ca…
Assessing inter- and intra-individual cognitive variability in patients at risk for cognitive impairment: the case of minimal hepatic encephalopathy
2014
Recent evidence reveals that inter- and intra-individual variability significantly affects cognitive performance in a number of neuropsychological pathologies. We applied a flexible family of statistical models to elucidate the contribution of inter- and intra-individual variables on cognitive functioning in healthy volunteers and patients at risk for hepatic encephalopathy (HE). Sixty-five volunteers (32 patients with cirrhosis and 33 healthy volunteers) were assessed by means of the Inhibitory Control Task (ICT). A Generalized Additive Model for Location, Scale and Shape (GAMLSS) was fitted for jointly modeling the mean and the intra-variability of Reaction Times (RTs) as a function of so…
Estimating COVID-19-induced Excess Mortality in Lombardy
2021
AbstractWe compare the expected all-cause mortality with the observed one for different age classes during the pandemic in Lombardy, which was the epicenter of the epidemic in Italy and still is the region most affected by the pandemic. A generalized linear mixed model is introduced to model weekly mortality from 2011 to 2019, taking into account seasonal patterns and year-specific trends. Based on the 2019 year-specific conditional best linear unbiased predictions, a significant excess of mortality is estimated in 2020, leading to approximately 35000 more deaths than expected, mainly arising during the first wave. In 2021, instead, the excess mortality is not significantly different from z…
Adaptive designs with correlated test statistics
2009
In clinical trials, the collected observations such as clustered data or repeated measurements are often correlated. As a consequence, test statistics in a multistage design are correlated. Adaptive designs were originally developed for independent test statistics. We present a general framework for two-stage adaptive designs with correlated test statistics. We show that the significance level for the Bauer-Köhne design is inflated for positively correlated test statistics from a bivariate normal distribution. The decision boundary for the second stage can be modified so that type one error is controlled. This general concept is expandable to other adaptive designs. In order to use these de…